Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7137
95 % 2 4 7277 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 7233
70 % 26 36 412
50 % 33 49 337
40 % 42 66 263
30 % 80 111 212
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65866
95 % 1 1 53452
90 % 1 1 50635
70 % 1 1 44236
50 % 1 1 37520
40 % 1 1 32852
30 % 1 1 27438

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2GUD 1 A, B griffithsin 35158
2 3LL2 1 A Griffithsin 373036
3 3LL1 1 A Griffithsin 373036
4 3LKY 1 A Griffithsin 373036
5 5YRH 1 A PPL3-a 113549
6 5YRH 2 B PPL3-b 113549
7 2GTY 1 A, B Griffithsin 35158
8 1OUW 1 A, B, C, D lectin 47519
9 5YRK 1 A, B PPL3-b 113549
10 4R6R 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
11 5YRE 1 A PPL3-a 113549
12 5YRE 2 B PPL3-a 113549
13 2NUO 1 A, B Griffithsin 35158
14 2HYR 1 A, B Griffithsin 35158
15 5YRM 1 A, B PPL3-b 113549
16 5YRG 1 A PPL3-a 113549
17 5YRG 2 B PPL3-a 113549
18 4PIT 1 A, B, C, D Ripening-associated protein 4641
19 2NU5 1 A, B griffithsin 373036
20 5TQZ 1 A, B, C, D Frutapin 194251
21 4PIU 1 A, B Ripening-associated protein 4641
22 5KRP 1 A, B, C, D Frutapin 194251
23 5M6O 1 A, B, C, D Frutapin 194251
24 4R6O 1 A, C, E, G Agglutinin alpha chain UNP RESIDUES 2-20 3490 3.5.1.2 | Details
25 5BN6 2 E, F, G, H Jacalin 3489
26 4AK4 1 A, C, E, G, I, K, M, O AGGLUTININ ALPHA CHAIN 3490 3.5.1.2 | Details
27 4R6Q 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
28 5GVY 1 A, B Salt stress-induced protein 4530
29 1UGX 1 A Agglutinin alpha chain 3490 3.5.1.2 | Details
30 3LLZ 1 A Agglutinin alpha chain 3496
31 5J51 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
32 1M26 1 A, C, E, G Jacalin, alpha chain complexed with T-antigen residues 85-217 of GB sequence entry AA32678 3490 3.5.1.2 | Details
33 5YRI 1 A PPL3-a 113549
34 5YRI 2 B PPL3-b 113549
35 4R6N 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
36 4PIK 1 A, B, C, D Ripening-associated protein 4641
37 4PIF 1 A, B, C, D Ripening-associated protein 4641
38 4R6P 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
39 5EXG 1 A, B Ripening-associated protein 4641
40 5XFI 1 A, B Lectin 47519
41 5J4X 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
42 2GUC 1 A, B griffithsin 35158
43 6FLW 1 A, B, C, D Jacalin-like lectin 4615
44 3LL0 1 A Griffithsin 373036
45 1UGW 1 A, G Agglutinin alpha chain 3490 3.5.1.2 | Details
46 1UGW 3 C, E Agglutinin alpha-chain 3490 3.5.1.2 | Details
47 3APA 1 A Zymogen granule membrane protein 16 UNP residues 21-159 9606
48 5YRF 1 A PPL3alpha 113549
49 5YRF 2 B PPL3alpha 113549
50 4WOG 1 A, B, C, D Frutalin 3488
51 1KU8 1 A, C, E, G JACALIN ALPHA CHAIN 3490 3.5.1.2 | Details
52 6FLZ 1 A, B Jacalin-like lectin 4615
53 1XXQ 1 A, B, C, D mannose-binding lectin 85232
54 5YRJ 1 A PPL3-a 113549
55 5YRJ 2 B PPL3-b 113549
56 1WS4 1 A, G Agglutinin alpha chain 3490 3.5.1.2 | Details
57 1WS4 3 C, E Agglutinin alpha chain 3490 3.5.1.2 | Details
58 1WS5 1 A, G Agglutinin alpha chain 3490 3.5.1.2 | Details
59 1WS5 3 C, E Agglutinin alpha chain 3490 3.5.1.2 | Details
60 3VZE 1 A Zymogen granule membrane protein 16 UNP residues 21-159 9606
61 4AKB 1 A, C, E, G AGGLUTININ ALPHA CHAIN 3490 3.5.1.2 | Details
62 4DDN 1 A, B, C, D Ipomoelin 4120
63 5YRL 1 A, B PPL3-b 113549
64 1PXD 1 A Agglutinin alpha chain 3490 3.5.1.2 | Details
65 5J4T 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
66 5XFH 1 A, B Salt stress-induced protein 4530
67 1C3M 1 A AGGLUTININ 4233
68 5JM1 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
69 2HYQ 1 A, B Griffithsin 35158
70 3P8S 1 A, B Jacalin beta-chain, alpha-chain 3489
71 3VY6 1 A Zymogen granule membrane protein 16 UNP residues 21-159 9606
72 1XXR 1 A, B, C, D mannose-binding lectin 85232
73 1KUJ 1 A, C, E, G JACALIN ALPHA CHAIN 3490 3.5.1.2 | Details
74 5J50 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
75 1C3K 1 A AGGLUTININ 4233
76 2GUE 1 A, B griffithsin 35158
77 5AV7 1 A, B, C, D Lectin 47519
78 3R51 1 A, B Ipomoelin 4120
79 3R52 1 A, B, C, D Ipomoelin 4120
80 1JOT 1 A AGGLUTININ 3496
81 4AKD 1 A, B, C, D MANNOSE-SPECIFIC LECTIN KM+ 3490
82 3VY7 1 A Zymogen granule membrane protein 16 UNP residues 21-159 9606
83 3LM1 1 A, C, E, G, I, K, M, O Agglutinin alpha chain 3496
84 3R50 1 A, B, C, D, E Ipomoelin 4120
85 1JAC 1 A, C, E, G JACALIN 3489 3.5.1.2 | Details
86 1UGY 1 A, G Agglutinin alpha chain 3490 3.5.1.2 | Details
87 1UGY 3 C, E Agglutinin alpha chain 3490 3.5.1.2 | Details
88 4AKC 1 A, C, E, G AGGLUTININ ALPHA CHAIN 3490 3.5.1.2 | Details
89 3LLY 1 A Agglutinin alpha chain 3496
90 1J4T 1 A, B, C, D, E, F, G, H Artocarpin 3490
91 3MIT 1 A, B Lectin 4641
92 1C3N 1 A AGGLUTININ 4233
93 1VBO 1 A, B, C, D, E, F, G, H artocarpin 3490
94 1TOQ 1 A, C, E, G AGGLUTININ ALPHA CHAIN 291940 3.5.1.2 | Details
95 1J4S 1 A, B, C, D Artocarpin 3490
96 2BMZ 1 A, B RIPENING-ASSOCIATED PROTEIN 4641
97 1X1V 1 A, B lectin 4641
98 6FLY 1 A, B Jacalin-like lectin 4615
99 3WOB 1 A hypothetical protein 9823
100 1UH1 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
101 1UH0 1 A, C, E, G Agglutinin alpha chain 3490 3.5.1.2 | Details
102 3MIU 1 A, B Lectin 4641
103 3WOC 1 A, B, C, D, E, F hypothetical protein 9823
104 2BN0 1 A, B RIPENING-ASSOCIATED PROTEIN 4641
105 2BMY 1 A, B RIPENING-ASSOCIATED PROTEIN 4641
106 3VZG 1 A Zymogen granule membrane protein 16 UNP residues 21-159 9606
107 1TP8 1 A, C, E, G AGGLUTININ ALPHA CHAIN 291940 3.5.1.2 | Details
108 3VZF 1 A Zymogen granule membrane protein 16 UNP residues 21-159 9606
109 1J4U 1 A, B, C, D Artocarpin 3490
110 3MIV 1 A, B Lectin 4641
111 1VBP 1 A, B artocarpin 3490