Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 6751
95 % 2 4 6883 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 6861
70 % 26 36 394
50 % 33 49 296
40 % 42 66 245
30 % 65 96 210
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63295
95 % 1 1 51436
90 % 1 1 48763
70 % 1 1 42683
50 % 1 1 36209
40 % 1 1 31676
30 % 1 1 26494

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3LLZ 1 A Agglutinin alpha chain 3496
2 1JOT 1 A AGGLUTININ 3496
3 3LM1 1 A, C, E, G, I, K, M, O Agglutinin alpha chain 3496
4 3LLY 1 A Agglutinin alpha chain 3496