Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7077
95 % 2 4 7220 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 7184
70 % 26 36 404
50 % 33 49 334
40 % 42 66 260
30 % 80 111 209
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65358
95 % 1 1 53052
90 % 1 1 50261
70 % 1 1 43934
50 % 1 1 37262
40 % 1 1 32625
30 % 1 1 27274

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3LLZ 1 A Agglutinin alpha chain 3496
2 1JOT 1 A AGGLUTININ 3496
3 3LM1 1 A, C, E, G, I, K, M, O Agglutinin alpha chain 3496
4 3LLY 1 A Agglutinin alpha chain 3496