Sequence Similarity Clusters for the Entities in PDB 1JOT

Entity #1 | Chains: A
AGGLUTININ protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 5750
95 % 2 4 6413 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 6396
70 % 26 36 364
50 % 33 49 261
40 % 33 49 277
30 % 63 93 193
Entity #2 | Chains: B
AGGLUTININ protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74651
95 % 1 1 52219
90 % 1 1 49555
70 % 1 1 43424
50 % 1 1 37101
40 % 1 1 32771
30 % 1 1 27866

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.