Sequence Similarity Clusters for the Entities in PDB 1JOJ

Entity #1 | Chains: A,B,C,D
Concanavalin-Br protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 54 59 182
95 % 78 86 143 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 80 91 149
70 % 103 114 138
50 % 103 114 168
40 % 103 114 184
30 % 103 114 200
Entity #2 | Chains: P,Q,R,S
HEXAPEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.