Sequence Similarity Clusters for the Entities in PDB 1JOE

Entity #1 | Chains: A,B,C,D
AUTOINDUCER-2 PRODUCTION PROTEIN protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13901
95 % 2 2 12654 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 12459
70 % 4 4 7047
50 % 4 4 6527
40 % 9 10 3061
30 % 9 10 2883

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5E68 1 A, B S-ribosylhomocysteine lyase 28901 4.4.1.21 | Details
2 1J6W 1 A, B AUTOINDUCER-2 PRODUCTION PROTEIN LUXS 727 4.4.1.21 | Details
3 5V2W 1 A, B S-ribosylhomocysteine lyase 28901 4.4.1.21 | Details
4 1JOE 1 A, B, C, D AUTOINDUCER-2 PRODUCTION PROTEIN 727 4.4.1.21 | Details