Sequence Similarity Clusters for the Entities in PDB 1JOE

Entity #1 | Chains: A,B,C,D
AUTOINDUCER-2 PRODUCTION PROTEIN protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14007
95 % 2 2 13187 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 12963
70 % 4 4 7232
50 % 4 4 6672
40 % 9 10 3080
30 % 9 10 2893

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures