Sequence Similarity Clusters for the Entities in PDB 1JOE

Entity #1 | Chains: A,B,C,D
AUTOINDUCER-2 PRODUCTION PROTEIN protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13292
95 % 2 2 12718 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 12504
70 % 4 4 6932
50 % 4 4 6405
40 % 9 10 3027
30 % 9 10 2839

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.