Sequence Similarity Clusters for the Entities in PDB 1JNN

Entity #1 | Chains: L
MONOCLONAL ANTI-ESTRADIOL 17E12E5 IMMUNOGLOBULIN KAPPA CHAIN protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41773
95 % 25 26 1050 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 34 37 779
70 % 2000 2392 1
50 % 4056 4843 1
40 % 4056 4843 1
30 % 4809 5705 1
Entity #2 | Chains: H
MONOCLONAL ANTI-ESTRADIOL 17E12E5 IMMUNOGLOBULIN GAMMA-1 CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41243
95 % 2 2 31479
90 % 2 2 30210
70 % 1958 2342 2
50 % 4057 4843 1
40 % 4057 4843 1
30 % 4810 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures