Sequence Similarity Clusters for the Entities in PDB 1JNM

Entity #1 | Chains: C,D
5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTO-ONCOGENE C-JUN protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 6875
95 % 2 7 6558 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 2 7 6538
70 % 3 13 2896
50 % 3 13 2850
40 % 4 17 1736
30 % 5 25 1182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.