Sequence Similarity Clusters for the Entities in PDB 1JNL

Entity #1 | Chains: L
monoclonal anti-estradiol 17E12E5 immunoglobulin kappa chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41388
95 % 21 26 1041 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 27 37 775
70 % 1707 2362 1
50 % 3460 4781 1
40 % 3460 4781 1
30 % 4085 5635 1
Entity #2 | Chains: H
monoclonal anti-estradiol 17E12E5 immunoglobulin gamma-1 chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40865
95 % 1 2 31212
90 % 1 2 29953
70 % 1667 2311 2
50 % 3461 4781 1
40 % 3461 4781 1
30 % 4086 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures