Sequence Similarity Clusters for the Entities in PDB 1JNL

Entity #1 | Chains: L
monoclonal anti-estradiol 17E12E5 immunoglobulin kappa chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40871
95 % 21 26 1023 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 27 37 761
70 % 1650 2287 1
50 % 3349 4633 1
40 % 3349 4633 1
30 % 3950 5461 1
Entity #2 | Chains: H
monoclonal anti-estradiol 17E12E5 immunoglobulin gamma-1 chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40365
95 % 1 2 30836
90 % 1 2 29599
70 % 1618 2244 2
50 % 3350 4633 1
40 % 3350 4633 1
30 % 3951 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.