Sequence Similarity Clusters for the Entities in PDB 1JNL

Entity #1 | Chains: L
monoclonal anti-estradiol 17E12E5 immunoglobulin kappa chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39676
95 % 21 26 1000 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 27 37 730
70 % 1348 1822 2
50 % 3276 4489 1
40 % 3276 4489 1
30 % 3856 5290 1
Entity #2 | Chains: H
monoclonal anti-estradiol 17E12E5 immunoglobulin gamma-1 chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39177
95 % 1 2 29930 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 28756
70 % 1582 2172 1
50 % 3277 4489 1
40 % 3277 4489 1
30 % 3857 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.