Sequence Similarity Clusters for the Entities in PDB 1JNL

Entity #1 | Chains: L
monoclonal anti-estradiol 17E12E5 immunoglobulin kappa chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 43120
95 % 21 26 1088 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 27 37 797
70 % 1832 2553 1
50 % 3725 5180 1
40 % 4218 5834 1
30 % 5266 7269 1
Entity #2 | Chains: H
monoclonal anti-estradiol 17E12E5 immunoglobulin gamma-1 chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 43119
95 % 1 2 36152 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 34521
70 % 1799 2511 2
50 % 3726 5180 1
40 % 4219 5834 1
30 % 5267 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures