Sequence Similarity Clusters for the Entities in PDB 1JNH

Entity #1 | Chains: A,C,E,G
monoclonal anti-estradiol 10G6D6 Fab light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15369
95 % 1 2 14437 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 25 45 393
70 % 1495 2327 1
50 % 3035 4713 1
40 % 3035 4713 1
30 % 3547 5567 1
Entity #2 | Chains: B,D,F,H
monoclonal anti-estradiol 10G6D6 Fab heavy chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15317
95 % 1 2 14393 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.5
PDBFlex
90 % 1 2 14145
70 % 1465 2280 2
50 % 3036 4713 1
40 % 3036 4713 1
30 % 3548 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.