Sequence Similarity Clusters for the Entities in PDB 1JNH

Entity #1 | Chains: A,C,E,G
monoclonal anti-estradiol 10G6D6 Fab light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14894
95 % 1 2 14002 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 25 45 384
70 % 242 398 10
50 % 2938 4537 1
40 % 2938 4537 1
30 % 3422 5342 1
Entity #2 | Chains: B,D,F,H
monoclonal anti-estradiol 10G6D6 Fab heavy chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14839
95 % 1 2 13954 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.5
PDBFlex
90 % 1 2 13707
70 % 1421 2197 1
50 % 2939 4537 1
40 % 2939 4537 1
30 % 3423 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.