Sequence Similarity Clusters for the Entities in PDB 1JNH

Entity #1 | Chains: A,C,E,G
monoclonal anti-estradiol 10G6D6 Fab light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15754
95 % 1 2 14750 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 25 45 441
70 % 1567 2426 1
50 % 3180 4913 1
40 % 3180 4913 1
30 % 3703 5780 1
Entity #2 | Chains: B,D,F,H
monoclonal anti-estradiol 10G6D6 Fab heavy chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15700
95 % 1 2 14704 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.5
PDBFlex
90 % 1 2 14459
70 % 1534 2376 2
50 % 3181 4913 1
40 % 3181 4913 1
30 % 3704 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures