Sequence Similarity Clusters for the Entities in PDB 1JNH

Entity #1 | Chains: A,C,E,G
monoclonal anti-estradiol 10G6D6 Fab light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16025
95 % 1 2 14980 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 25 45 459
70 % 1602 2479 1
50 % 3251 5021 1
40 % 3251 5021 1
30 % 3829 5951 1
Entity #2 | Chains: B,D,F,H
monoclonal anti-estradiol 10G6D6 Fab heavy chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15971
95 % 1 2 14935 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.5
PDBFlex
90 % 1 2 14679
70 % 1569 2429 2
50 % 3252 5021 1
40 % 3252 5021 1
30 % 3830 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures