Sequence Similarity Clusters for the Entities in PDB 1JN6

Entity #1 | Chains: A
monoclonal anti-estradiol 10G6D6 Fab light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16001
95 % 2 2 14961 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 31 45 458
70 % 1770 2474 1
50 % 3592 5011 1
40 % 3592 5011 1
30 % 4277 5941 1
Entity #2 | Chains: B
monoclonal anti-estradiol 10G6D6 Fab heavy chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15947
95 % 2 2 14916 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.5
PDBFlex
90 % 2 2 14662
70 % 1731 2424 2
50 % 3593 5011 1
40 % 3593 5011 1
30 % 4278 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures