Sequence Similarity Clusters for the Entities in PDB 1JN6

Entity #1 | Chains: A
monoclonal anti-estradiol 10G6D6 Fab light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15452
95 % 2 2 14512 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 31 45 417
70 % 1685 2362 1
50 % 3416 4781 1
40 % 3416 4781 1
30 % 4034 5635 1
Entity #2 | Chains: B
monoclonal anti-estradiol 10G6D6 Fab heavy chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15400
95 % 2 2 14467 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.5
PDBFlex
90 % 2 2 14222
70 % 1645 2311 2
50 % 3417 4781 1
40 % 3417 4781 1
30 % 4035 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures