Sequence Similarity Clusters for the Entities in PDB 1JN5

Entity #1 | Chains: A
p15 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 23840
95 % 2 3 20426 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 2 3 19853
70 % 2 3 18292
50 % 2 3 15857
40 % 2 3 14101
30 % 22 25 1135
Entity #2 | Chains: B
TAP protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39876
95 % 2 2 30774 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 29676
70 % 2 2 26712
50 % 2 2 22817
40 % 2 2 20086
30 % 2 2 17032
Entity #3 | Chains: C
FG-repeat protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures