Sequence Similarity Clusters for the Entities in PDB 1JMZ

Entity #1 | Chains: A
Amine Dehydrogenase protein, length: 494 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 33151
95 % 2 2 26939
90 % 2 2 26017
70 % 2 2 23593
50 % 2 2 20371
40 % 4 4 11959
30 % 4 4 10401
Entity #2 | Chains: B
Amine Dehydrogenase protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36134
95 % 2 2 28633 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 27631
70 % 2 2 24962
50 % 2 2 21434
40 % 2 2 18955
30 % 4 4 10756
Entity #3 | Chains: G
Amine Dehydrogenase protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 49616
95 % 2 2 37011 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 35313
70 % 2 2 31363
50 % 4 4 16562
40 % 4 4 14757
30 % 4 4 12621

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures