Sequence Similarity Clusters for the Entities in PDB 1JMZ

Entity #1 | Chains: A
Amine Dehydrogenase protein, length: 494 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 32757
95 % 2 2 26623
90 % 2 2 25718
70 % 2 2 23336
50 % 2 2 20162
40 % 4 4 11820
30 % 4 4 10278
Entity #2 | Chains: B
Amine Dehydrogenase protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35698
95 % 2 2 28292 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 27308
70 % 2 2 24683
50 % 2 2 21206
40 % 2 2 18759
30 % 4 4 10630
Entity #3 | Chains: G
Amine Dehydrogenase protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 49046
95 % 2 2 36595 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 34930
70 % 2 2 31034
50 % 4 4 16378
40 % 4 4 14601
30 % 4 4 12489

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures