Sequence Similarity Clusters for the Entities in PDB 1JMX

Entity #1 | Chains: A
Amine Dehydrogenase protein, length: 494 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 32210
95 % 1 2 26227
90 % 1 2 25339
70 % 1 2 23001
50 % 1 2 19886
40 % 2 4 11648
30 % 2 4 10129
Entity #2 | Chains: B
Amine Dehydrogenase protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35092
95 % 1 2 27869 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 26906
70 % 1 2 24332
50 % 1 2 20915
40 % 1 2 18510
30 % 2 4 10471
Entity #3 | Chains: G
Amine Dehydrogenase protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48291
95 % 1 2 36086 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 34457
70 % 1 2 30628
50 % 2 4 16135
40 % 2 4 14392
30 % 2 4 12313

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures