Sequence Similarity Clusters for the Entities in PDB 1JMU

Entity #1 | Chains: A,C,E
PROTEIN MU-1 protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28133
95 % 1 1 23323
90 % 1 1 22590
70 % 1 1 20689
50 % 1 1 17999
40 % 1 1 16028
30 % 1 1 13763
Entity #2 | Chains: B,D,F
PROTEIN MU-1 protein, length: 666 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 3864
95 % 1 2 4591
90 % 1 2 4599
70 % 1 2 4510
50 % 1 2 4355
40 % 1 2 4156
30 % 1 2 3829
Entity #3 | Chains: G,H,I
SIGMA 3 PROTEIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 3907
95 % 2 3 4051
90 % 2 3 4071
70 % 2 3 3984
50 % 2 3 3876
40 % 2 3 3719
30 % 2 3 3447

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.