Sequence Similarity Clusters for the Entities in PDB 1JMU

Entity #1 | Chains: A,C,E
PROTEIN MU-1 protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29916
95 % 1 1 24823 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 24008
70 % 1 1 21852
50 % 1 1 18932
40 % 1 1 16859
30 % 1 1 14465
Entity #2 | Chains: B,D,F
PROTEIN MU-1 protein, length: 666 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 4154
95 % 1 2 4927
90 % 1 2 4941
70 % 1 2 4841
50 % 1 2 4640
40 % 1 2 4410
30 % 1 2 4054
Entity #3 | Chains: G,H,I
SIGMA 3 PROTEIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4207
95 % 2 3 4311 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 3 4337
70 % 2 3 4260
50 % 2 3 4112
40 % 2 3 3936
30 % 2 3 3647

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.