Sequence Similarity Clusters for the Entities in PDB 1JMU

Entity #1 | Chains: A,C,E
PROTEIN MU-1 protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31161
95 % 1 1 25800 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 24927
70 % 1 1 22632
50 % 1 1 19572
40 % 1 1 17411
30 % 1 1 14936
Entity #2 | Chains: B,D,F
PROTEIN MU-1 protein, length: 666 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4387
95 % 1 2 5172 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 2 5192
70 % 1 2 5070
50 % 1 2 4836
40 % 1 2 4586
30 % 1 2 4215
Entity #3 | Chains: G,H,I
SIGMA 3 PROTEIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4441
95 % 2 3 4517 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 3 4552
70 % 2 3 4459
50 % 2 3 4286
40 % 2 3 4089
30 % 2 3 3789

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures