Sequence Similarity Clusters for the Entities in PDB 1JMU

Entity #1 | Chains: A,C,E
PROTEIN MU-1 protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29660
95 % 1 1 25883 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 24977
70 % 1 1 22638
50 % 1 1 19441
40 % 1 1 17175
30 % 1 1 13203
Entity #2 | Chains: B,D,F
PROTEIN MU-1 protein, length: 666 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 5180
95 % 1 2 5506 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 2 5540
70 % 1 2 5427
50 % 1 2 5162
40 % 1 2 4842
30 % 1 2 4335
Entity #3 | Chains: G,H,I
SIGMA 3 PROTEIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 5105
95 % 2 3 4653 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 3 4689
70 % 2 3 4574
50 % 2 3 4389
40 % 2 3 4146
30 % 2 3 3753

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures