Sequence Similarity Clusters for the Entities in PDB 1JMU

Entity #1 | Chains: A,C,E
PROTEIN MU-1 protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30566
95 % 1 1 25337 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 24493
70 % 1 1 22258
50 % 1 1 19275
40 % 1 1 17158
30 % 1 1 14726
Entity #2 | Chains: B,D,F
PROTEIN MU-1 protein, length: 666 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4277
95 % 1 2 5054 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 2 5067
70 % 1 2 4955
50 % 1 2 4741
40 % 1 2 4504
30 % 1 2 4132
Entity #3 | Chains: G,H,I
SIGMA 3 PROTEIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4329
95 % 2 3 4413 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 3 4438
70 % 2 3 4354
50 % 2 3 4193
40 % 2 3 4009
30 % 2 3 3714

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures