Sequence Similarity Clusters for the Entities in PDB 1JMO

Entity #1 | Chains: L
Thrombin, light chain protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 15 1956
95 % 10 15 2551
90 % 10 15 2598
70 % 13 24 1413
50 % 18 41 812
40 % 18 41 842
30 % 18 41 834
Entity #2 | Chains: H
Thrombin, heavy chain protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 11 2298
95 % 271 367 35
90 % 274 374 36
70 % 280 398 41
50 % 280 398 75
40 % 1245 1617 4
30 % 1344 1759 6
Entity #3 | Chains: A
HEPARIN COFACTOR II protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23842
95 % 1 2 20237
90 % 1 2 19696
70 % 1 2 18175
50 % 1 2 15861
40 % 1 2 14180
30 % 1 2 12178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.