Sequence Similarity Clusters for the Entities in PDB 1JMO

Entity #1 | Chains: L
Thrombin, light chain protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 16 1916
95 % 10 16 2496
90 % 10 16 2545
70 % 13 25 1398
50 % 18 42 814
40 % 18 42 845
30 % 18 42 829
Entity #2 | Chains: H
Thrombin, heavy chain protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 11 2336
95 % 274 370 36
90 % 277 377 38
70 % 283 401 44
50 % 283 401 78
40 % 1257 1635 4
30 % 1356 1777 6
Entity #3 | Chains: A
HEPARIN COFACTOR II protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 24207
95 % 1 2 20555
90 % 1 2 19998
70 % 1 2 18444
50 % 1 2 16081
40 % 1 2 14373
30 % 1 2 12332

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.