Sequence Similarity Clusters for the Entities in PDB 1JMO

Entity #1 | Chains: L
Thrombin, light chain protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 16 2147
95 % 10 16 2731 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 10 16 2780
70 % 13 25 1509
50 % 18 42 879
40 % 18 42 910
30 % 18 42 897
Entity #2 | Chains: H
Thrombin, heavy chain protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 11 2586
95 % 280 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 283 384 48
70 % 289 408 46
50 % 289 408 84
40 % 1426 1864 4
30 % 1435 1886 6
Entity #3 | Chains: A
HEPARIN COFACTOR II protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26406
95 % 1 2 22359 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 1 2 21703
70 % 1 2 19908
50 % 1 2 17272
40 % 1 2 15408
30 % 1 2 13218

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures