Sequence Similarity Clusters for the Entities in PDB 1JMO

Entity #1 | Chains: L
Thrombin, light chain protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 16 2015
95 % 10 16 2595 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 10 16 2640
70 % 13 25 1443
50 % 18 42 847
40 % 18 42 878
30 % 18 42 864
Entity #2 | Chains: H
Thrombin, heavy chain protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 11 2444
95 % 278 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 281 381 38
70 % 287 405 45
50 % 287 405 80
40 % 1304 1685 4
30 % 1403 1834 6
Entity #3 | Chains: A
HEPARIN COFACTOR II protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25219
95 % 1 2 21433 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 1 2 20831
70 % 1 2 19130
50 % 1 2 16633
40 % 1 2 14857
30 % 1 2 12744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.