Sequence Similarity Clusters for the Entities in PDB 1JMO

Entity #1 | Chains: L
Thrombin, light chain protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 16 1933
95 % 10 16 2513 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 10 16 2562
70 % 13 25 1406
50 % 18 42 820
40 % 18 42 855
30 % 18 42 837
Entity #2 | Chains: H
Thrombin, heavy chain protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 11 2358
95 % 275 372 36 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 278 379 38
70 % 284 403 45
50 % 284 403 77
40 % 1290 1669 4
30 % 1389 1811 6
Entity #3 | Chains: A
HEPARIN COFACTOR II protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24418
95 % 1 2 20738 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 1 2 20172
70 % 1 2 18602
50 % 1 2 16199
40 % 1 2 14470
30 % 1 2 12415

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.