Sequence Similarity Clusters for the Entities in PDB 1JMO

Entity #1 | Chains: L
Thrombin, light chain protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 16 2318
95 % 10 16 2598 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 10 16 2664
70 % 13 25 1480
50 % 18 42 863
40 % 18 42 887
30 % 18 42 873
Entity #2 | Chains: H
Thrombin, heavy chain protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35173
95 % 280 377 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 283 384 39
70 % 289 408 47
50 % 289 408 86
40 % 1419 1855 4
30 % 1427 1869 7
Entity #3 | Chains: A
HEPARIN COFACTOR II protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27857
95 % 1 2 24388 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 1 2 23583
70 % 1 2 21415
50 % 1 2 18439
40 % 1 2 16280
30 % 1 2 13666

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures