Sequence Similarity Clusters for the Entities in PDB 1JMJ

Entity #1 | Chains: A,B
HEPARIN COFACTOR II protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25219
95 % 2 2 21433 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 2 2 20831
70 % 2 2 19130
50 % 2 2 16633
40 % 2 2 14857
30 % 2 2 12744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.