Sequence Similarity Clusters for the Entities in PDB 1JMJ

Entity #1 | Chains: A,B
HEPARIN COFACTOR II protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24819
95 % 2 2 21069 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 2 2 20482
70 % 2 2 18862
50 % 2 2 16413
40 % 2 2 14668
30 % 2 2 12583

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.