Sequence Similarity Clusters for the Entities in PDB 1JMJ

Entity #1 | Chains: A,B
HEPARIN COFACTOR II protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28601
95 % 2 2 25009 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 2 2 24159
70 % 2 2 21926
50 % 2 2 18837
40 % 2 2 16638
30 % 2 2 13952

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures