Sequence Similarity Clusters for the Entities in PDB 1JMC

Entity #1 | Chains: B
DNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (REPLICATION PROTEIN A (RPA)) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27128
95 % 1 2 22672 Flexibility: Medium
Max RMSD: 9.5, Avg RMSD: 8.9
PDBFlex
90 % 1 2 22012
70 % 1 2 20184
50 % 1 2 17493
40 % 1 2 15604
30 % 1 2 13346

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1JMC 2 A PROTEIN (REPLICATION PROTEIN A (RPA)) 9606
2 1FGU 1 A, B REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT CENTRAL DOMAIN 9606