Sequence Similarity Clusters for the Entities in PDB 1JMC

Entity #1 | Chains: B
DNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (REPLICATION PROTEIN A (RPA)) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28218
95 % 1 2 26358 Flexibility: Medium
Max RMSD: 9.5, Avg RMSD: 8.9
PDBFlex
90 % 1 2 25413
70 % 1 2 22963
50 % 1 2 19711
40 % 1 2 17396
30 % 1 2 14595

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1JMC 2 A PROTEIN (REPLICATION PROTEIN A (RPA)) 9606
2 1FGU 1 A, B REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT CENTRAL DOMAIN 9606