Sequence Similarity Clusters for the Entities in PDB 1JMC

Entity #1 | Chains: B
DNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (REPLICATION PROTEIN A (RPA)) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26945
95 % 1 2 22535 Flexibility: Medium
Max RMSD: 9.5, Avg RMSD: 8.9
PDBFlex
90 % 1 2 21881
70 % 1 2 20080
50 % 1 2 17400
40 % 1 2 15521
30 % 1 2 13271

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.