Sequence Similarity Clusters for the Entities in PDB 1JMC

Entity #1 | Chains: B
DNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (REPLICATION PROTEIN A (RPA)) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27720
95 % 1 2 23131 Flexibility: Medium
Max RMSD: 9.5, Avg RMSD: 8.9
PDBFlex
90 % 1 2 22436
70 % 1 2 20576
50 % 1 2 17818
40 % 1 2 15879
30 % 1 2 13576

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures