Sequence Similarity Clusters for the Entities in PDB 1JMA

Entity #1 | Chains: B
HERPESVIRUS ENTRY MEDIATOR protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65321
95 % 1 1 45404
90 % 1 1 43040
70 % 1 1 37802
50 % 2 2 23984
40 % 2 2 21099
30 % 6 8 4348
Entity #2 | Chains: A
GLYCOPROTEIN D protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 5891
95 % 3 6 5280 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.0
PDBFlex
90 % 3 6 5309
70 % 5 9 3639
50 % 5 9 3545
40 % 5 9 3420
30 % 5 9 3205

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures