Sequence Similarity Clusters for the Entities in PDB 1JMA

Entity #1 | Chains: B
HERPESVIRUS ENTRY MEDIATOR protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51403
95 % 1 1 42438
90 % 1 1 40417
70 % 1 1 35686
50 % 2 2 21594
40 % 2 2 21556
30 % 26 39 792
Entity #2 | Chains: A
GLYCOPROTEIN D protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 6704
95 % 3 6 5479 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 0.9
PDBFlex
90 % 3 6 5512
70 % 5 9 3692
50 % 5 9 3614
40 % 5 9 3449
30 % 5 9 3174

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures