Sequence Similarity Clusters for the Entities in PDB 1JMA

Entity #1 | Chains: B
HERPESVIRUS ENTRY MEDIATOR protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64124
95 % 1 1 44620
90 % 1 1 42333
70 % 1 1 37202
50 % 2 2 23629
40 % 2 2 20789
30 % 6 8 4260
Entity #2 | Chains: A
GLYCOPROTEIN D protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 5764
95 % 3 6 5159 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.0
PDBFlex
90 % 3 6 5182
70 % 5 9 3549
50 % 5 9 3461
40 % 5 9 3342
30 % 5 9 3134

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures