Sequence Similarity Clusters for the Entities in PDB 1JMA

Entity #1 | Chains: B
HERPESVIRUS ENTRY MEDIATOR protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62405
95 % 1 1 43450
90 % 1 1 41263
70 % 1 1 36326
50 % 2 2 23082
40 % 2 2 20306
30 % 6 8 4153
Entity #2 | Chains: A
GLYCOPROTEIN D protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 5571
95 % 3 6 4983
90 % 3 6 5000
70 % 5 9 3435
50 % 5 9 3367
40 % 5 9 3260
30 % 5 9 3051

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.