Sequence Similarity Clusters for the Entities in PDB 1JMA

Entity #1 | Chains: B
HERPESVIRUS ENTRY MEDIATOR protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63236
95 % 1 1 44034
90 % 1 1 41802
70 % 1 1 36756
50 % 2 2 23322
40 % 2 2 20526
30 % 6 8 4206
Entity #2 | Chains: A
GLYCOPROTEIN D protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 5671
95 % 3 6 5077 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.0
PDBFlex
90 % 3 6 5099
70 % 5 9 3496
50 % 5 9 3413
40 % 5 9 3303
30 % 5 9 3093

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.