Sequence Similarity Clusters for the Entities in PDB 1JMA

Entity #1 | Chains: B
HERPESVIRUS ENTRY MEDIATOR protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61061
95 % 1 1 42481
90 % 1 1 40380
70 % 1 1 35600
50 % 2 2 22660
40 % 2 2 19937
30 % 6 8 4042
Entity #2 | Chains: A
GLYCOPROTEIN D protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 5412
95 % 3 6 4838 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 0.9
PDBFlex
90 % 3 6 4856
70 % 5 9 3361
50 % 5 9 3288
40 % 5 9 3191
30 % 5 9 2981

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.