Sequence Similarity Clusters for the Entities in PDB 1JM4

Entity #1 | Chains: A
HIV-1 Tat Peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
P300/CBP-associated Factor protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 11190
95 % 22 22 1506
90 % 23 23 1504
70 % 25 26 1318
50 % 25 26 1370
40 % 25 26 1380
30 % 1098 1099 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures