Sequence Similarity Clusters for the Entities in PDB 1JM4

Entity #1 | Chains: A
HIV-1 Tat Peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
P300/CBP-associated Factor protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 11108
95 % 22 22 1512
90 % 23 23 1507
70 % 25 26 1341
50 % 25 26 1390
40 % 25 26 1372
30 % 844 845 21

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures