Sequence Similarity Clusters for the Entities in PDB 1JM4

Entity #1 | Chains: A
HIV-1 Tat Peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
P300/CBP-associated Factor protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 10991
95 % 22 22 1484
90 % 23 23 1487
70 % 25 26 1301
50 % 25 26 1353
40 % 25 26 1363
30 % 1078 1079 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures