Sequence Similarity Clusters for the Entities in PDB 1JLQ

Entity #1 | Chains: A
HIV-1 RT, A-CHAIN protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 61 537
95 % 175 255 91 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 175 255 95
70 % 175 255 112
50 % 176 256 151
40 % 177 257 164
30 % 177 257 176
Entity #2 | Chains: B
HIV-1 RT, B-CHAIN protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 57 662
95 % 170 249 115 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 170 249 119
70 % 170 249 134
50 % 172 251 159
40 % 172 251 174
30 % 172 251 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures