Sequence Similarity Clusters for the Entities in PDB 1JLE

Entity #1 | Chains: A
HIV-1 RT, A-CHAIN protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 16394
95 % 190 238 104 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 190 238 109
70 % 190 238 124
50 % 191 239 152
40 % 191 239 170
30 % 191 239 184
Entity #2 | Chains: B
HIV-1 RT, B-CHAIN protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 17154
95 % 185 232 115
90 % 185 232 118
70 % 185 232 135
50 % 186 233 161
40 % 186 233 178
30 % 186 233 192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.