Sequence Similarity Clusters for the Entities in PDB 1JLE

Entity #1 | Chains: A
HIV-1 RT, A-CHAIN protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 17097
95 % 204 252 92 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 204 252 97
70 % 204 252 114
50 % 205 253 152
40 % 206 254 165
30 % 206 254 179
Entity #2 | Chains: B
HIV-1 RT, B-CHAIN protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 17889
95 % 199 246 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 199 246 120
70 % 199 246 136
50 % 201 248 159
40 % 201 248 176
30 % 201 248 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures