Sequence Similarity Clusters for the Entities in PDB 1JLC

Entity #1 | Chains: A
HIV-1 RT A-chain protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 13008
95 % 182 252 92 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 182 252 97
70 % 182 252 114
50 % 183 253 154
40 % 184 254 169
30 % 184 254 192
Entity #2 | Chains: B
HIV-1 RT B-chain protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15475
95 % 177 246 117 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 177 246 121
70 % 177 246 135
50 % 179 248 161
40 % 179 248 179
30 % 179 248 200

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures