Sequence Similarity Clusters for the Entities in PDB 1JLC

Entity #1 | Chains: A
HIV-1 RT A-chain protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 15017
95 % 186 256 112 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 186 256 117
70 % 186 256 130
50 % 187 257 157
40 % 188 258 168
30 % 188 258 179
Entity #2 | Chains: B
HIV-1 RT B-chain protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 15135
95 % 181 250 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 181 250 122
70 % 181 250 137
50 % 183 252 164
40 % 183 252 175
30 % 183 252 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures