Sequence Similarity Clusters for the Entities in PDB 1JLB

Entity #1 | Chains: A
HIV-1 RT A-chain protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 13441
95 % 154 257 113
90 % 154 257 118
70 % 154 257 131
50 % 155 258 162
40 % 155 259 172
30 % 155 259 191
Entity #2 | Chains: B
HIV-1 RT B-chain protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15960
95 % 149 251 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 149 251 122
70 % 149 251 139
50 % 150 253 168
40 % 150 253 182
30 % 150 253 203

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures