Sequence Similarity Clusters for the Entities in PDB 1JLA

Entity #1 | Chains: A
HIV-1 RT A-chain protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 14117
95 % 47 248 82 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 4.0
PDBFlex
90 % 47 248 87
70 % 47 160 105
50 % 48 160 142
40 % 48 249 158
30 % 48 249 176
Entity #2 | Chains: B
HIV-1 RT B-chain protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 14230
95 % 45 146 107 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 45 146 112
70 % 45 148 130
50 % 46 243 152
40 % 46 243 170
30 % 46 243 184

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.