Sequence Similarity Clusters for the Entities in PDB 1JL9

Entity #1 | Chains: A,B
EPIDERMAL GROWTH FACTOR protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 10428
95 % 2 6 8436 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.1
PDBFlex
90 % 2 6 8368
70 % 2 6 8059
50 % 4 22 2365
40 % 4 22 2335
30 % 4 22 2192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NQL 2 B epidermal growth factor 9606
2 1JL9 1 A, B EPIDERMAL GROWTH FACTOR RESIDUES 1-51 9606
3 1IVO 2 C, D Epidermal growth factor RESIDUES 1-53 9606
4 3NJP 2 C, D Epidermal growth factor 9606
5 2KV4 1 A Epidermal growth factor 9606
6 1P9J 1 A chimera of Epidermal growth factor(EGF) and Transforming growth factor alpha (TGF-alpha) TGF-alpha (residues 1-7), EGF (residues 8-54) 9606