Sequence Similarity Clusters for the Entities in PDB 1JL4

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K ALPHA CHAIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 20450
95 % 16 16 2203
90 % 23 23 1383
70 % 44 44 705
50 % 144 144 180
40 % 144 144 195
30 % 299 300 91
Entity #2 | Chains: B
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K BETA CHAIN protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40238
95 % 7 7 7409
90 % 14 14 3426
70 % 135 135 166
50 % 144 144 179
40 % 144 144 194
30 % 300 300 91
Entity #3 | Chains: C
OVOTRANSFERRIN protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 35 744
95 % 36 40 897
90 % 36 40 928
70 % 36 40 954
50 % 36 40 988
40 % 36 40 1006
30 % 36 40 981

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.