Sequence Similarity Clusters for the Entities in PDB 1JL4

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K ALPHA CHAIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21475
95 % 16 16 2316 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 23 23 1459
70 % 44 44 748
50 % 149 149 176
40 % 149 149 192
30 % 309 310 98
Entity #2 | Chains: B
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K BETA CHAIN protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 42051
95 % 7 7 7797
90 % 14 14 3567
70 % 140 140 161
50 % 149 149 175
40 % 149 149 191
30 % 310 310 98
Entity #3 | Chains: C
OVOTRANSFERRIN protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 38 704
95 % 36 43 836
90 % 36 43 867
70 % 36 43 900
50 % 36 43 948
40 % 36 43 972
30 % 36 43 945

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.