Sequence Similarity Clusters for the Entities in PDB 1JL4

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K ALPHA CHAIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21099
95 % 16 16 2288 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 23 23 1440
70 % 44 44 739
50 % 146 146 178
40 % 146 146 194
30 % 303 304 100
Entity #2 | Chains: B
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K BETA CHAIN protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41410
95 % 7 7 7678 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 14 14 3521
70 % 137 137 163
50 % 146 146 177
40 % 146 146 193
30 % 304 304 100
Entity #3 | Chains: C
OVOTRANSFERRIN protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 38 695
95 % 36 43 831 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 36 43 860
70 % 36 43 893
50 % 36 43 938
40 % 36 43 964
30 % 36 43 940

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.