Sequence Similarity Clusters for the Entities in PDB 1JL4

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K ALPHA CHAIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 19909
95 % 16 16 2147
90 % 23 23 1348
70 % 42 42 715
50 % 142 142 175
40 % 142 142 189
30 % 295 296 95
Entity #2 | Chains: B
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K BETA CHAIN protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39199
95 % 7 7 7193
90 % 14 14 3347
70 % 133 133 163
50 % 142 142 174
40 % 142 142 188
30 % 296 296 95
Entity #3 | Chains: C
OVOTRANSFERRIN protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 35 708
95 % 36 40 841
90 % 36 40 877
70 % 36 40 912
50 % 36 40 952
40 % 36 40 975
30 % 36 40 958

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.