Sequence Similarity Clusters for the Entities in PDB 1JKJ

Entity #1 | Chains: A,D
succinyl-CoA synthetase alpha subunit protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 2608
95 % 4 11 2612 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 11 2680
70 % 4 11 2662
50 % 12 24 1480
40 % 12 24 1472
30 % 12 24 1462
Entity #2 | Chains: B,E
succinyl-CoA synthetase beta subunit protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 2315
95 % 4 11 2603 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 4 11 2670
70 % 4 11 2653
50 % 4 11 2631
40 % 9 21 1593
30 % 9 21 1576

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures