Sequence Similarity Clusters for the Entities in PDB 1JKJ

Entity #1 | Chains: A,D
succinyl-CoA synthetase alpha subunit protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4770
95 % 4 11 2433 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 11 2490
70 % 4 11 2481
50 % 12 23 1425
40 % 12 23 1440
30 % 12 23 1415
Entity #2 | Chains: B,E
succinyl-CoA synthetase beta subunit protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 2083
95 % 4 11 2385 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 4 11 2445
70 % 4 11 2435
50 % 4 11 2421
40 % 9 20 1559
30 % 9 20 1537

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.