Sequence Similarity Clusters for the Entities in PDB 1JKG

Entity #1 | Chains: A
p15 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 23501
95 % 1 3 20158 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 1 3 19601
70 % 1 3 18071
50 % 1 3 15675
40 % 1 3 13946
30 % 8 25 1123
Entity #2 | Chains: B
TAP protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39397
95 % 1 2 30413 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 29338
70 % 1 2 26421
50 % 1 2 22581
40 % 1 2 19883
30 % 1 2 16855

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures