Sequence Similarity Clusters for the Entities in PDB 1JK9

Entity #1 | Chains: A,C
superoxide dismutase protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43852
95 % 12 12 2958 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 12 12 3005
70 % 12 12 2977
50 % 137 152 54
40 % 138 153 67
30 % 163 181 64
Entity #2 | Chains: B,D
copper chaperone for superoxide dismutase protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38608
95 % 2 2 17895 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 2 2 17528
70 % 2 2 16271
50 % 2 2 14186
40 % 2 2 12675
30 % 2 2 10873

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.