Sequence Similarity Clusters for the Entities in PDB 1JK9

Entity #1 | Chains: A,C
superoxide dismutase protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44730
95 % 12 12 3033 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 12 12 3079
70 % 12 12 3051
50 % 137 152 63
40 % 138 153 81
30 % 163 181 68
Entity #2 | Chains: B,D
copper chaperone for superoxide dismutase protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39388
95 % 2 2 18251 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 2 2 17871
70 % 2 2 16596
50 % 2 2 14457
40 % 2 2 12905
30 % 2 2 11070

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures