Sequence Similarity Clusters for the Entities in PDB 1JK9

Entity #1 | Chains: A,C
superoxide dismutase protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45334
95 % 12 12 3076 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 12 12 3121
70 % 12 12 3085
50 % 137 152 68
40 % 138 153 88
30 % 163 181 71
Entity #2 | Chains: B,D
copper chaperone for superoxide dismutase protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39917
95 % 2 2 18522 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 2 2 18134
70 % 2 2 16827
50 % 2 2 14648
40 % 2 2 13069
30 % 2 2 11210

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures