Sequence Similarity Clusters for the Entities in PDB 1JK8

Entity #1 | Chains: A
MHC class II HLA-DQ8 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60692
95 % 3 8 4645 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 6 18 1861
70 % 18 48 705
50 % 75 170 175
40 % 75 170 188
30 % 151 353 85
Entity #2 | Chains: B
MHC class II HLA-DQ8 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 11224
95 % 4 10 3599 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.9
PDBFlex
90 % 8 21 1743
70 % 75 169 151
50 % 75 171 174
40 % 75 171 187
30 % 152 353 85
Entity #3 | Chains: C
insulin B peptide protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures