Sequence Similarity Clusters for the Entities in PDB 1JK8

Entity #1 | Chains: A
MHC class II HLA-DQ8 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62063
95 % 2 7 5833 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 5 17 2001
70 % 14 44 748
50 % 58 149 176
40 % 58 149 192
30 % 117 310 98
Entity #2 | Chains: B
MHC class II HLA-DQ8 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21103
95 % 3 9 4383 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.9
PDBFlex
90 % 7 20 1814
70 % 56 140 161
50 % 58 149 175
40 % 58 149 191
30 % 118 310 98
Entity #3 | Chains: C
insulin B peptide protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.