Sequence Similarity Clusters for the Entities in PDB 1JK8

Entity #1 | Chains: A
MHC class II HLA-DQ8 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62783
95 % 2 7 5912
90 % 5 17 2027
70 % 14 44 756
50 % 58 149 180
40 % 58 149 196
30 % 117 310 99
Entity #2 | Chains: B
MHC class II HLA-DQ8 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21339
95 % 3 9 4446 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 7 20 1837
70 % 56 140 166
50 % 58 149 179
40 % 58 149 195
30 % 118 310 99
Entity #3 | Chains: C
insulin B peptide protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.