Sequence Similarity Clusters for the Entities in PDB 1JK8

Entity #1 | Chains: A
MHC class II HLA-DQ8 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63747
95 % 3 8 4550
90 % 6 18 1822
70 % 18 48 694
50 % 69 161 179
40 % 69 161 194
30 % 139 334 83
Entity #2 | Chains: B
MHC class II HLA-DQ8 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10711
95 % 4 10 3629 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 8 21 1686
70 % 67 152 159
50 % 69 161 178
40 % 69 161 193
30 % 140 334 83
Entity #3 | Chains: C
insulin B peptide protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures