Sequence Similarity Clusters for the Entities in PDB 1JK2

Entity #1 | Chains: B
5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*TP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*TP*CP*AP*GP*CP*CP*CP*AP*CP*GP*C)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
ZIF268 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46313
95 % 6 16 3704 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 6 16 3743
70 % 6 18 2911
50 % 13 34 1398
40 % 14 181 255
30 % 15 203 230

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.