Sequence Similarity Clusters for the Entities in PDB 1JJW

Entity #1 | Chains: A,B,C
ATP-DEPENDENT PROTEASE HSLV protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 942
95 % 2 6 1268 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 2 6 1300
70 % 2 16 503
50 % 2 23 365
40 % 2 23 380
30 % 2 23 383

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures