Sequence Similarity Clusters for the Entities in PDB 1JJU

Entity #1 | Chains: A
QUINOHEMOPROTEIN AMINE DEHYDROGENASE protein, length: 489 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 32558
95 % 2 2 26481 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 25588
70 % 2 2 23221
50 % 2 2 20076
40 % 3 4 11753
30 % 3 4 10223
Entity #2 | Chains: B
QUINOHEMOPROTEIN AMINE DEHYDROGENASE protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35799
95 % 2 2 28347 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 27373
70 % 2 2 24732
50 % 2 2 21260
40 % 2 2 18797
30 % 3 4 10570
Entity #3 | Chains: C
QUINOHEMOPROTEIN AMINE DEHYDROGENASE protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 48702
95 % 2 2 36370 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 34728
70 % 2 2 30860
50 % 3 4 16284
40 % 3 4 14522
30 % 3 4 12427

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures