Sequence Similarity Clusters for the Entities in PDB 1JJU

Entity #1 | Chains: A
QUINOHEMOPROTEIN AMINE DEHYDROGENASE protein, length: 489 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33201
95 % 2 2 26967 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 26044
70 % 2 2 23616
50 % 2 2 20388
40 % 3 4 11959
30 % 3 4 10401
Entity #2 | Chains: B
QUINOHEMOPROTEIN AMINE DEHYDROGENASE protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36518
95 % 2 2 28876 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 27868
70 % 2 2 25159
50 % 2 2 21600
40 % 2 2 19090
30 % 3 4 10756
Entity #3 | Chains: C
QUINOHEMOPROTEIN AMINE DEHYDROGENASE protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 49615
95 % 2 2 37010 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 35312
70 % 2 2 31362
50 % 3 4 16562
40 % 3 4 14757
30 % 3 4 12621

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures