Sequence Similarity Clusters for the Entities in PDB 1JJC

Entity #1 | Chains: A
PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 7156
95 % 1 9 7725 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 1 9 7671
70 % 1 9 7462
50 % 1 9 6878
40 % 3 15 2889
30 % 3 15 2699
Entity #2 | Chains: B
PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 5665
95 % 1 12 5350 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 1 12 5375
70 % 1 12 5288
50 % 1 12 5046
40 % 1 12 4770
30 % 5 20 2099

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures