Sequence Similarity Clusters for the Entities in PDB 1JJ2

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L10E protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 20 2442
95 % 1 20 3077 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 1 20 3122
70 % 1 27 2169
50 % 5 74 713
40 % 5 79 691
30 % 5 79 688
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 74 432
95 % 5 74 604 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 74 633
70 % 5 74 672
50 % 5 74 718
40 % 6 77 714
30 % 6 78 697
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 44 846
95 % 5 68 676 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 5 68 706
70 % 5 68 761
50 % 5 177 202
40 % 7 531 20
30 % 7 531 33
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 74 431
95 % 5 74 603 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 5 74 632
70 % 5 74 669
50 % 5 74 714
40 % 5 74 747
30 % 6 511 37
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 20 2426
95 % 1 20 3055 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 1 20 3101
70 % 5 68 751
50 % 5 173 209
40 % 5 173 230
30 % 5 173 239
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 74 429
95 % 5 74 601 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 5 74 630
70 % 5 74 666
50 % 5 76 688
40 % 5 76 721
30 % 5 79 686
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 68 487
95 % 5 68 677 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 5 68 708
70 % 5 68 763
50 % 5 70 775
40 % 5 70 807
30 % 5 70 798
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 21 2224
95 % 5 68 674 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 5 68 703
70 % 5 68 758
50 % 5 68 805
40 % 5 72 778
30 % 5 72 770
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 68 489
95 % 5 68 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 68 712
70 % 5 68 767
50 % 5 70 776
40 % 5 70 808
30 % 5 71 783
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 67 504
95 % 5 68 672 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 5 68 701
70 % 5 68 755
50 % 5 68 802
40 % 5 68 837
30 % 5 176 231
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 74 436
95 % 5 74 608 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 5 74 637
70 % 5 74 677
50 % 5 76 692
40 % 5 78 701
30 % 6 417 61
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 74 435
95 % 5 74 607 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 74 636
70 % 5 74 675
50 % 5 181 200
40 % 5 181 219
30 % 5 181 227
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 70 464
95 % 5 70 653 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 5 70 679
70 % 5 70 733
50 % 5 70 779
40 % 5 70 812
30 % 5 70 802
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 74 437
95 % 5 74 609 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 5 74 638
70 % 5 74 678
50 % 5 74 722
40 % 6 381 58
30 % 6 407 65
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 68 485
95 % 5 68 673 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 68 702
70 % 5 68 756
50 % 5 68 803
40 % 5 70 804
30 % 5 71 781
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 68 491
95 % 5 68 683 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 5 68 714
70 % 5 68 769
50 % 5 68 811
40 % 5 68 844
30 % 5 68 831
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 63 556
95 % 5 63 769 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 63 796
70 % 5 63 845
50 % 5 63 888
40 % 5 63 909
30 % 5 63 894
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 20 2507
95 % 1 20 3123 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 1 20 3167
70 % 1 21 2915
50 % 2 30 1938
40 % 2 130 299
30 % 5 153 268
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 68 493
95 % 5 68 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 68 717
70 % 5 68 772
50 % 5 69 792
40 % 5 69 826
30 % 5 69 816
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L39E protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 20 2512
95 % 5 68 687 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 5 68 718
70 % 5 68 773
50 % 5 174 205
40 % 5 174 229
30 % 5 174 238
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 21 2207
95 % 5 68 669 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 5 68 697
70 % 5 68 750
50 % 5 172 208
40 % 5 174 228
30 % 5 174 236
Entity #30 | Chains: 2
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 68 490
95 % 5 68 682 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 5 68 713
70 % 5 68 768
50 % 5 68 810
40 % 5 68 843
30 % 5 170 242
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 67 502
95 % 5 74 593 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 5 74 624
70 % 5 74 662
50 % 5 74 708
40 % 5 181 217
30 % 5 181 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 44 840
95 % 5 74 597 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 5 74 628
70 % 5 74 664
50 % 5 74 710
40 % 5 76 719
30 % 5 78 693
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 74 430
95 % 5 74 602 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 5 74 631
70 % 5 74 667
50 % 5 74 712
40 % 5 181 218
30 % 5 181 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 68 484
95 % 5 68 671
90 % 5 68 699
70 % 5 68 753
50 % 5 68 801
40 % 5 175 224
30 % 7 522 36
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 21 2238
95 % 1 21 2881 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 5 68 707
70 % 5 68 762
50 % 15 105 334
40 % 20 123 282
30 % 20 125 289
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L10 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 44 834
95 % 4 64 746 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 4 64 776
70 % 4 64 820
50 % 4 64 868
40 % 4 64 888
30 % 4 65 869

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.