Sequence Similarity Clusters for the Entities in PDB 1JIW

Entity #1 | Chains: P
ALKALINE METALLOPROTEINASE protein, length: 470 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 15850
95 % 2 4 14741 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 2 4 14447
70 % 2 4 13525
50 % 7 28 2177
40 % 7 28 2163
30 % 7 28 2038
Entity #2 | Chains: I
PROTEINASE INHIBITOR protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 43093
95 % 1 2 37563
90 % 1 2 35834
70 % 1 2 31816
50 % 1 2 27061
40 % 1 2 20230
30 % 1 3 13929

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures