Sequence Similarity Clusters for the Entities in PDB 1JID

Entity #1 | Chains: B
HELIX 6 OF HUMAN SRP RNA rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13738
95 % 1 4 13073 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 1 4 12850
70 % 1 4 12091
50 % 1 4 10780
40 % 1 4 9779
30 % 1 4 8525

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.