Sequence Similarity Clusters for the Entities in PDB 1JID

Entity #1 | Chains: B
HELIX 6 OF HUMAN SRP RNA rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 14050
95 % 1 4 13336 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 1 4 13115
70 % 1 4 12335
50 % 1 4 10993
40 % 1 4 9963
30 % 1 4 8685

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures