Sequence Similarity Clusters for the Entities in PDB 1JHT

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 109 204 53
95 % 146 255 60 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 162 309 36
70 % 386 732 6
50 % 387 737 7
40 % 410 788 10
30 % 440 919 15
Entity #2 | Chains: B
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 351 632 2
95 % 379 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 382 685 4
70 % 461 936 4
50 % 469 958 3
40 % 469 958 7
30 % 469 958 12
Entity #3 | Chains: C
nonameric peptide ligand from the MART-1/Melan-A protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures