Sequence Similarity Clusters for the Entities in PDB 1JHT

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 109 204 52
95 % 145 254 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 159 302 35
70 % 378 717 6
50 % 379 722 6
40 % 402 773 10
30 % 432 897 15
Entity #2 | Chains: B
beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 345 618 2
95 % 373 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 376 671 4
70 % 454 914 4
50 % 462 936 3
40 % 462 936 7
30 % 462 936 12
Entity #3 | Chains: C
nonameric peptide ligand from the MART-1/Melan-A protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.