Sequence Similarity Clusters for the Entities in PDB 1JHL

Entity #1 | Chains: L
IGG1-KAPPA D11.15 FV (LIGHT CHAIN) protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68775
95 % 1 1 47443
90 % 1 1 44999
70 % 112 191 72
50 % 178 308 21
40 % 527 929 5
30 % 589 1056 7
Entity #2 | Chains: H
IGG1-KAPPA D11.15 FV (HEAVY CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67986
95 % 1 1 46839
90 % 1 1 44425
70 % 36 85 257
50 % 326 576 7
40 % 528 929 5
30 % 590 1056 7
Entity #3 | Chains: A
PHEASANT EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66726
95 % 2 2 24073 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 656 730 5
70 % 870 950 7
50 % 876 958 8
40 % 906 992 11
30 % 906 992 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.