Sequence Similarity Clusters for the Entities in PDB 1JHL

Entity #1 | Chains: L
IGG1-KAPPA D11.15 FV (LIGHT CHAIN) protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70075
95 % 1 1 48279
90 % 1 1 45748
70 % 112 192 73
50 % 178 309 23
40 % 535 945 5
30 % 598 1074 7
Entity #2 | Chains: H
IGG1-KAPPA D11.15 FV (HEAVY CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69275
95 % 1 1 47672
90 % 1 1 45171
70 % 36 85 266
50 % 334 591 7
40 % 536 945 5
30 % 599 1074 7
Entity #3 | Chains: A
PHEASANT EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68007
95 % 2 2 24564 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 662 736 5
70 % 876 956 7
50 % 882 964 8
40 % 912 998 11
30 % 912 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures