Sequence Similarity Clusters for the Entities in PDB 1JHL

Entity #1 | Chains: L
IGG1-KAPPA D11.15 FV (LIGHT CHAIN) protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51004
95 % 1 1 42121
90 % 1 1 40119
70 % 124 215 66
50 % 181 319 21
40 % 205 363 27
30 % 3486 7269 1
Entity #2 | Chains: H
IGG1-KAPPA D11.15 FV (HEAVY CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51002
95 % 1 1 42120
90 % 1 1 40118
70 % 36 87 266
50 % 345 613 6
40 % 2855 5834 1
30 % 3487 7269 1
Entity #3 | Chains: A
PHEASANT EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51003
95 % 2 2 23126 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 676 751 5
70 % 892 974 7
50 % 898 982 8
40 % 929 1017 10
30 % 929 1017 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures