Sequence Similarity Clusters for the Entities in PDB 1JHL

Entity #1 | Chains: L
IGG1-KAPPA D11.15 FV (LIGHT CHAIN) protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71058
95 % 1 1 48928
90 % 1 1 46340
70 % 113 195 75
50 % 179 315 23
40 % 540 963 5
30 % 603 1093 7
Entity #2 | Chains: H
IGG1-KAPPA D11.15 FV (HEAVY CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70251
95 % 1 1 48315
90 % 1 1 45758
70 % 36 86 269
50 % 338 603 7
40 % 541 963 5
30 % 604 1093 7
Entity #3 | Chains: A
PHEASANT EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68972
95 % 2 2 24927 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 663 738 5
70 % 879 961 7
50 % 885 969 8
40 % 915 1003 11
30 % 915 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures