Sequence Similarity Clusters for the Entities in PDB 1JHK

Entity #1 | Chains: L
Ig kappa-chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39918
95 % 18 26 1016 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 23 37 757
70 % 1329 2264 1
50 % 2710 4587 1
40 % 2710 4587 1
30 % 3118 5392 1
Entity #2 | Chains: H
Ig gamma-1-chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39539
95 % 2 2 30215 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 29044
70 % 1312 2222 2
50 % 2711 4587 1
40 % 2711 4587 1
30 % 3119 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.