Sequence Similarity Clusters for the Entities in PDB 1JHK

Entity #1 | Chains: L
Ig kappa-chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40557
95 % 18 26 1023 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 23 37 761
70 % 1341 2287 1
50 % 2733 4633 1
40 % 2733 4633 1
30 % 3152 5461 1
Entity #2 | Chains: H
Ig gamma-1-chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40174
95 % 2 2 30721
90 % 2 2 29516
70 % 1323 2244 2
50 % 2734 4633 1
40 % 2734 4633 1
30 % 3153 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.