Sequence Similarity Clusters for the Entities in PDB 1JHK

Entity #1 | Chains: L
Ig kappa-chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35098
95 % 18 26 1078 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 23 37 796
70 % 1486 2519 1
50 % 3029 5107 1
40 % 3449 5756 1
30 % 4244 7175 1
Entity #2 | Chains: H
Ig gamma-1-chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30867
95 % 2 2 26822 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 25856
70 % 1465 2478 2
50 % 3030 5107 1
40 % 3450 5756 1
30 % 4245 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures