Sequence Similarity Clusters for the Entities in PDB 1JH0

Entity #1 | Chains: L
Photosynthetic Reaction Center L subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57089
95 % 93 97 358 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 93 97 382
70 % 93 97 417
50 % 115 129 360
40 % 115 129 380
30 % 115 129 380
Entity #2 | Chains: M
Photosynthetic Reaction Center M subunit protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 62 493
95 % 93 97 357 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 93 97 381
70 % 93 97 415
50 % 115 129 359
40 % 115 129 379
30 % 115 129 379
Entity #3 | Chains: H
Photosynthetic Reaction Center H subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 92 96 261
95 % 93 97 359 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 93 97 383
70 % 93 97 418
50 % 93 97 496
40 % 115 129 381
30 % 115 129 381

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.