Sequence Similarity Clusters for the Entities in PDB 1JGZ

Entity #1 | Chains: L
Photosynthetic Reaction Center L subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 68 418
95 % 64 97 344 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 64 97 369
70 % 64 97 407
50 % 80 126 344
40 % 80 126 371
30 % 80 126 377
Entity #2 | Chains: M
Photosynthetic Reaction Center M subunit protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54393
95 % 64 97 343 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 64 97 368
70 % 64 97 405
50 % 80 126 343
40 % 80 126 370
30 % 80 126 375
Entity #3 | Chains: H
Photosynthetic Reaction Center H subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 96 248
95 % 64 97 345
90 % 64 97 370
70 % 64 97 408
50 % 64 97 480
40 % 80 126 372
30 % 80 126 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.