Sequence Similarity Clusters for the Entities in PDB 1JGY

Entity #1 | Chains: L
Photosynthetic Reaction Center L Subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 68 448
95 % 67 97 364 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 67 97 391
70 % 67 97 430
50 % 85 129 379
40 % 85 129 402
30 % 85 129 404
Entity #2 | Chains: M
Photosynthetic Reaction Center M Subunit protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56708
95 % 67 97 363 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 67 97 390
70 % 67 97 428
50 % 85 129 378
40 % 85 129 401
30 % 85 129 403
Entity #3 | Chains: H
Photosynthetic Reaction Center H Subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 67 96 270
95 % 67 97 365 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 67 97 392
70 % 67 97 431
50 % 67 97 503
40 % 85 129 403
30 % 85 129 405

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2WJN 4 M REACTION CENTER PROTEIN M CHAIN 1079
2 3T6E 4 M Reaction center protein M chain 1079
3 2J8C 3 M REACTION CENTER PROTEIN M CHAIN PH 8 NEUTRAL STATE 1063
4 2WJM 4 M REACTION CENTER PROTEIN M CHAIN 1079
5 2I5N 4 M Reaction center protein M chain 1079
6 1RZH 2 M Reaction center protein M chain 1063
7 3T6D 4 M Photosynthetic reaction center M-subunit 1079
8 3I4D 2 M Reaction center protein M chain 1063
9 1QOV 3 M PHOTOSYNTHETIC REACTION CENTER 1063
10 1DXR 4 M PHOTOSYNTHETIC REACTION CENTER M SUBUNIT 1079
11 2J8D 3 M REACTION CENTER PROTEIN M CHAIN PH 8 NEUTRAL STATE 1063
12 2UWW 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
13 2UWU 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 NEUTRAL STATE, 2ND DATASET 1063
14 4IN5 2 M Reaction center protein M chain 1063
15 2JIY 3 M REACTION CENTER PROTEIN M CHAIN 1063
16 1VRN 4 M Reaction center protein M chain 1079
17 1E6D 3 M PHOTOSYNTHETIC REACTION CENTER M SUBUNIT 1063
18 1RY5 2 M Reaction center protein M chain 1063
19 2GNU 3 M Reaction center protein M chain Reaction Center Protein M chain, residue 2-301 1063
20 5NJ4 4 M Reaction center protein M chain 1079
21 6PRC 3 M PHOTOSYNTHETIC REACTION CENTER 1079
22 2UX5 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
23 2UXJ 3 M REACTION CENTER PROTEIN M CHAIN PH 10 NEUTRAL STATE 1063
24 1YF6 2 M Reaction center protein M chain M203D, M210F, M214H, M260W 1063
25 2UWV 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
26 1RG5 2 M Reaction center protein M chain 1063
27 2UXK 3 M REACTION CENTER PROTEIN M CHAIN PH 10 CHARGE-SEPARATED STATE 1063
28 1PRC 3 M PHOTOSYNTHETIC REACTION CENTER 1079
29 2BOZ 3 M REACTION CENTER PROTEIN M CHAIN 1063
30 3ZUW 3 M REACTION CENTER PROTEIN M CHAIN 1063
31 3PRC 3 M PHOTOSYNTHETIC REACTION CENTER 1079
32 1AIJ 2 M, S PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) 1063
33 4TQQ 3 M Reaction center protein M chain 1063
34 5PRC 3 M PHOTOSYNTHETIC REACTION CENTER 1079
35 5LSE 2 M Reaction center protein M chain Leu M215 ALA engineered mutation 1063
36 2HG9 2 M Reaction center protein M chain 1063
37 2JBL 4 M REACTION CENTER PROTEIN M CHAIN 1079
38 2HHK 2 M Reaction center protein M chain 1063
39 5LRI 2 M Reaction center protein M chain 1063
40 2PRC 3 M PHOTOSYNTHETIC REACTION CENTER 1079
41 3G7F 4 M Photosynthetic reaction center M subunit 1079
42 1EYS 3 M PHOTOSYNTHETIC REACTION CENTER M SUBUNIT 1050
43 2UX3 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
44 2HH1 2 M Reaction center protein M chain 1063
45 1OGV 3 M REACTION CENTER PROTEIN M CHAIN 1063
46 2UX4 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
47 1M3X 2 M Photosynthetic Reaction center protein M chain 1063
48 1RQK 2 M Reaction center protein M chain 1063
49 1KBY 2 M PHOTOSYNTHETIC REACTION CENTER PROTEIN M CHAIN 1063
50 2HG3 2 M Reaction center protein M chain 1063
51 3ZUM 3 M REACTION CENTER PROTEIN M CHAIN 1063
52 2UWT 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
53 1RZZ 2 M, S Reaction center protein M chain 1063
54 1MPS 2 M PHOTOSYNTHETIC REACTION CENTER 1063
55 1L9B 2 M REACTION CENTER PROTEIN M CHAIN 1063
56 7PRC 3 M PHOTOSYNTHETIC REACTION CENTER 1079
57 1PCR 2 M PHOTOSYNTHETIC REACTION CENTER 1063
58 5O4C 4 M Reaction center protein M chain 1079
59 2BNS 2 B REACTION CENTRE PROTEIN M CHAIN 1063
60 4IN6 2 M Reaction center protein M chain 1063
61 2GMR 2 M Photosynthetic Reaction center protein M chain 1063
62 4N7L 3 M Reaction center protein M chain 1063
63 2UXM 3 M REACTION CENTER PROTEIN M CHAIN PH 10 CHARGE-SEPARATED STATE 1063
64 2HIT 2 M Reaction center protein M chain 1063
65 4IN7 3 M Reaction center protein M chain 1063
66 4HBJ 2 M Reaction center protein M chain 1063
67 1DV3 2 M, S PHOTOSYNTHETIC REACTION CENTER REACTION CENTER M CHAIN 1063
68 1DS8 2 M, S REACTION CENTER PROTEIN M CHAIN 1063
69 1AIG 2 M, O PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) 1063
70 2UXL 3 M REACTION CENTER PROTEIN M CHAIN PH 10 NEUTRAL STATE 1063
71 4H9L 2 M Reaction center protein M chain 1063
72 1FNP 2 M REACTION CENTER PROTEIN M CHAIN 1063
73 1FNQ 2 M REACTION CENTER PROTEIN M CHAIN 1063
74 1RGN 2 M Reaction center protein M chain 1063
75 4N7K 3 M Reaction center protein M chain 1063
76 3DU3 2 M Reaction center protein M chain 1063
77 4H99 2 M Reaction center protein M chain 1063
78 3DUQ 2 M Reaction center protein M chain 1063
79 1S00 2 M, S Reaction center protein M chain 1063
80 2BNP 2 B REACTION CENTRE PROTEIN M CHAIN 1063
81 2HJ6 2 M Reaction center protein M chain 1063
82 1JGZ 2 M Photosynthetic Reaction Center M subunit 1063
83 1DV6 2 M, S PHOTOSYNTHETIC REACTION CENTER M CHAIN 1063
84 4HBH 2 M Reaction center protein M chain 1063
85 1JGY 2 M Photosynthetic Reaction Center M Subunit 1063
86 2JJ0 3 M REACTION CENTER PROTEIN M CHAIN 1063
87 1R2C 3 M Reaction center protein M chain 1079
88 5O64 4 M Reaction center protein M chain 1079
89 1JGW 2 M Photosynthetic Reaction Center M subunit 1063
90 1E14 3 M PHOTOSYNTHETIC REACTION CENTER M SUBUNIT 1063
91 3DSY 2 M Reaction center protein M chain 1063
92 1RVJ 2 M Reaction center protein M chain 1063
93 2UWS 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
94 2WX5 3 M REACTION CENTRE PROTEIN M CHAIN 1063
95 3V3Z 3 M Reaction center protein M chain 1063
96 1F6N 2 M REACTION CENTER PROTEIN M CHAIN 1063
97 1UMX 3 M REACTION CENTER PROTEIN M CHAIN 1063
98 3DU2 2 M Reaction center protein M chain 1063
99 4RCR 2 M PHOTOSYNTHETIC REACTION CENTER 1063
100 1K6L 2 M PHOTOSYNTHETIC REACTION CENTER M SUBUNIT 1063
101 4LWY 3 M Reaction center protein M chain 1063
102 3DTR 2 M Reaction center protein M chain 1063
103 1JGX 2 M Photosynthetic Reaction Center M subunit 1063
104 1K6N 2 M PHOTOSYNTHETIC REACTION CENTER M SUBUNIT 1063
105 3D38 4 M Reaction center protein M chain 1079
106 1PST 2 M PHOTOSYNTHETIC REACTION CENTER 1063
107 3DTA 2 M Reaction center protein M chain 1063
108 3DTS 2 M Reaction center protein M chain 1063
109 3V3Y 3 M Reaction center protein M chain 1063
110 1PSS 2 M PHOTOSYNTHETIC REACTION CENTER 1063
111 2RCR 2 M PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) 1063
112 1YST 2 M PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) 1063
113 2X5U 4 M REACTION CENTER PROTEIN M CHAIN 1079
114 5V33 3 M Reaction center protein M chain 1063
115 1JH0 2 M Photosynthetic Reaction Center M subunit 1063
116 2X5V 4 M REACTION CENTER PROTEIN M CHAIN 1079
117 1L9J 2 M, S REACTION CENTER PROTEIN M CHAIN 1063
118 5M7L 3 C Reaction center protein M chain 1079
119 5M7K 3 C Reaction center protein M chain 1079
120 5M7J 3 C Reaction center protein M chain 1079
121 5B5M 3 M, y Photosynthetic reaction center M subunit UNP RESIDUES 1-319 1050
122 5B5N 3 M, y Photosynthetic reaction center M subunit UNP RESIDUES 1-319 1050
123 3WMM 3 M Photosynthetic reaction center M subunit 1050
124 4V8K 3 AM, BM Photosynthetic reaction center M subunit 1050
125 4CAS 3 C REACTION CENTER PROTEIN M CHAIN 1079
126 1Z9J 2 B Reaction center protein M chain 1063
127 4V9G 6 AM, BM Reaction center protein M chain 1063
128 1Z9K 2 B Reaction center protein M chain 1063
129 4AC5 4 M REACTION CENTER PROTEIN M CHAIN 1079