Sequence Similarity Clusters for the Entities in PDB 1JGY

Entity #1 | Chains: L
Photosynthetic Reaction Center L Subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 68 448
95 % 67 97 363 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 67 97 391
70 % 67 97 428
50 % 85 129 379
40 % 85 129 401
30 % 85 129 402
Entity #2 | Chains: M
Photosynthetic Reaction Center M Subunit protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56580
95 % 67 97 362 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 67 97 390
70 % 67 97 426
50 % 85 129 378
40 % 85 129 400
30 % 85 129 401
Entity #3 | Chains: H
Photosynthetic Reaction Center H Subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 67 96 269
95 % 67 97 364 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 67 97 392
70 % 67 97 429
50 % 67 97 501
40 % 85 129 402
30 % 85 129 403

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2J8C 2 L REACTION CENTER PROTEIN L CHAIN PH 8 NEUTRAL STATE 1063
2 3I4D 1 L Reaction center protein L chain 1063
3 1QOV 2 L PHOTOSYNTHETIC REACTION CENTER 1063
4 2J8D 2 L REACTION CENTER PROTEIN L CHAIN PH 8 NEUTRAL STATE 1063
5 2UWW 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
6 2UWU 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 NEUTRAL STATE, 2ND DATASET 1063
7 4IN5 1 L Reaction center protein L chain 1063
8 2JIY 2 L REACTION CENTER PROTEIN L CHAIN 1063
9 1E6D 2 L PHOTOSYNTHETIC REACTION CENTER L SUBUNIT 1063
10 2GNU 2 L Reaction center protein L chain 1063
11 2UX5 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
12 2UXJ 2 L REACTION CENTER PROTEIN L CHAIN PH 10 NEUTRAL STATE 1063
13 2UWV 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
14 1RG5 1 L Reaction center protein L chain 1063
15 2UXK 2 L REACTION CENTER PROTEIN L CHAIN PH 10 CHARGE-SEPARATED STATE 1063
16 2BOZ 2 L REACTION CENTER PROTEIN L CHAIN 1063
17 1AIJ 1 L, R PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) 1063
18 4TQQ 2 L Reaction center protein L chain 1063
19 2HG9 1 L Reaction center protein L chain 1063
20 2HHK 1 L Reaction center protein L chain 1063
21 2UX3 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
22 2HH1 1 L Reaction center protein L chain 1063
23 1OGV 2 L REACTION CENTER PROTEIN L CHAIN 1063
24 2UX4 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
25 1M3X 1 L Photosynthetic Reaction center protein L chain 1063
26 1RQK 1 L Reaction center protein L chain 1063
27 1KBY 1 L PHOTOSYNTHETIC REACTION CENTER PROTEIN L CHAIN 1063
28 2HG3 1 L Reaction center protein L chain 1063
29 2UWT 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
30 1MPS 1 L PHOTOSYNTHETIC REACTION CENTER 1063
31 1L9B 1 L REACTION CENTER PROTEIN L CHAIN 1063
32 1PCR 1 L PHOTOSYNTHETIC REACTION CENTER 1063
33 2BNS 1 A REACTION CENTRE PROTEIN L CHAIN 1063
34 4IN6 1 L Reaction center protein L chain 1063
35 4N7L 2 L Reaction center protein L chain 1063
36 2UXM 2 L REACTION CENTER PROTEIN L CHAIN PH 10 CHARGE-SEPARATED STATE 1063
37 2HIT 1 L Reaction center protein L chain 1063
38 4IN7 2 L Reaction center protein L chain 1063
39 4HBJ 1 L Reaction center protein L chain 1063
40 1DV3 1 L, R PHOTOSYNTHETIC REACTION CENTER REACTION CENTER L CHAIN 1063
41 1DS8 1 L, R REACTION CENTER PROTEIN L CHAIN 1063
42 1AIG 1 L, N PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) 1063
43 2UXL 2 L REACTION CENTER PROTEIN L CHAIN PH 10 NEUTRAL STATE 1063
44 4H9L 1 L Reaction center protein L chain 1063
45 1RGN 1 L Reaction center protein L chain 1063
46 4N7K 2 L Reaction center protein L chain 1063
47 4H99 1 L Reaction center protein L chain 1063
48 2BNP 1 A REACTION CENTRE PROTEIN L CHAIN 1063
49 2HJ6 1 L Reaction center protein L chain 1063
50 1JGZ 1 L Photosynthetic Reaction Center L subunit 1063
51 1DV6 1 L, R PHOTOSYNTHETIC REACTION CENTER L CHAIN 1063
52 4HBH 1 L Reaction center protein L chain 1063
53 1JGY 1 L Photosynthetic Reaction Center L Subunit 1063
54 2JJ0 2 L REACTION CENTER PROTEIN L CHAIN 1063
55 1JGW 1 L Photosynthetic Reaction Center L subunit 1063
56 1E14 2 L PHOTOSYNTHETIC REACTION CENTER L SUBUNIT 1063
57 2UWS 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
58 1UMX 2 L REACTION CENTER PROTEIN L CHAIN 1063
59 4RCR 1 L PHOTOSYNTHETIC REACTION CENTER 1063
60 1K6L 1 L PHOTOSYNTHETIC REACTION CENTER L SUBUNIT 1063
61 1JGX 1 L Photosynthetic Reaction Center L subunit 1063
62 1PST 1 L PHOTOSYNTHETIC REACTION CENTER 1063
63 1PSS 1 L PHOTOSYNTHETIC REACTION CENTER 1063
64 2RCR 1 L PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) 1063
65 1YST 1 L PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) 1063
66 1L9J 1 L, R REACTION CENTER PROTEIN L CHAIN 1063
67 4V9G 5 AL, BL Reaction center protein L chain 1063
68 1Z9K 1 A Reaction center protein L chain 1063