Sequence Similarity Clusters for the Entities in PDB 1JGY

Entity #1 | Chains: L
Photosynthetic Reaction Center L Subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 64 90 374
95 % 67 97 412 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 67 97 451
70 % 67 97 484
50 % 86 131 418
40 % 86 131 442
30 % 86 131 443
Entity #2 | Chains: M
Photosynthetic Reaction Center M Subunit protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 56 693
95 % 67 97 415 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 67 97 454
70 % 67 97 487
50 % 86 131 419
40 % 86 131 441
30 % 86 131 442
Entity #3 | Chains: H
Photosynthetic Reaction Center H Subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 67 96 339
95 % 67 97 419 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 67 97 458
70 % 67 97 492
50 % 67 97 538
40 % 86 131 443
30 % 86 131 445

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2J8C 2 L REACTION CENTER PROTEIN L CHAIN PH 8 NEUTRAL STATE 1063
2 1RZH 1 L Reaction center protein L chain 1063
3 3I4D 1 L Reaction center protein L chain 1063
4 1QOV 2 L PHOTOSYNTHETIC REACTION CENTER 1063
5 2J8D 2 L REACTION CENTER PROTEIN L CHAIN PH 8 NEUTRAL STATE 1063
6 2UWW 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
7 2UWU 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 NEUTRAL STATE, 2ND DATASET 1063
8 4IN5 1 L Reaction center protein L chain 1063
9 2JIY 2 L REACTION CENTER PROTEIN L CHAIN 1063
10 1E6D 2 L PHOTOSYNTHETIC REACTION CENTER L SUBUNIT 1063
11 1RY5 1 L Reaction center protein L chain 1063
12 2GNU 2 L Reaction center protein L chain 1063
13 2UX5 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
14 2UXJ 2 L REACTION CENTER PROTEIN L CHAIN PH 10 NEUTRAL STATE 1063
15 1YF6 1 L Reaction center protein L chain L181Y 1063
16 2UWV 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
17 1RG5 1 L Reaction center protein L chain 1063
18 2UXK 2 L REACTION CENTER PROTEIN L CHAIN PH 10 CHARGE-SEPARATED STATE 1063
19 2BOZ 2 L REACTION CENTER PROTEIN L CHAIN 1063
20 3ZUW 2 L REACTION CENTER PROTEIN L CHAIN 1063
21 1AIJ 1 L, R PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) 1063
22 4TQQ 2 L Reaction center protein L chain 1063
23 5LSE 1 L Reaction center protein L chain Glu L212 to Ala engineered mutation Asp L213 to Ala engineered mutation 1063
24 2HG9 1 L Reaction center protein L chain 1063
25 2HHK 1 L Reaction center protein L chain 1063
26 2UX3 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
27 2HH1 1 L Reaction center protein L chain 1063
28 1OGV 2 L REACTION CENTER PROTEIN L CHAIN 1063
29 2UX4 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
30 1M3X 1 L Photosynthetic Reaction center protein L chain 1063
31 1RQK 1 L Reaction center protein L chain 1063
32 1KBY 1 L PHOTOSYNTHETIC REACTION CENTER PROTEIN L CHAIN 1063
33 2HG3 1 L Reaction center protein L chain 1063
34 2UWT 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
35 1RZZ 1 L, R Reaction center protein L chain 1063
36 1MPS 1 L PHOTOSYNTHETIC REACTION CENTER 1063
37 1L9B 1 L REACTION CENTER PROTEIN L CHAIN 1063
38 1PCR 1 L PHOTOSYNTHETIC REACTION CENTER 1063
39 2BNS 1 A REACTION CENTRE PROTEIN L CHAIN 1063
40 4IN6 1 L Reaction center protein L chain 1063
41 2GMR 1 L Photosynthetic Reaction center protein L chain 1063
42 4N7L 2 L Reaction center protein L chain 1063
43 2UXM 2 L REACTION CENTER PROTEIN L CHAIN PH 10 CHARGE-SEPARATED STATE 1063
44 2HIT 1 L Reaction center protein L chain 1063
45 4IN7 2 L Reaction center protein L chain 1063
46 4HBJ 1 L Reaction center protein L chain 1063
47 1DV3 1 L, R PHOTOSYNTHETIC REACTION CENTER REACTION CENTER L CHAIN 1063
48 1DS8 1 L, R REACTION CENTER PROTEIN L CHAIN 1063
49 1AIG 1 L, N PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) 1063
50 2UXL 2 L REACTION CENTER PROTEIN L CHAIN PH 10 NEUTRAL STATE 1063
51 4H9L 1 L Reaction center protein L chain 1063
52 1FNQ 1 L REACTION CENTER PROTEIN L CHAIN 1063
53 1RGN 1 L Reaction center protein L chain 1063
54 4N7K 2 L Reaction center protein L chain 1063
55 3DU3 1 L Reaction center protein L chain 1063
56 4H99 1 L Reaction center protein L chain 1063
57 3DUQ 1 L Reaction center protein L chain 1063
58 1S00 1 L, R Reaction center protein L chain 1063
59 2BNP 1 A REACTION CENTRE PROTEIN L CHAIN 1063
60 2HJ6 1 L Reaction center protein L chain 1063
61 1JGZ 1 L Photosynthetic Reaction Center L subunit 1063
62 1DV6 1 L, R PHOTOSYNTHETIC REACTION CENTER L CHAIN 1063
63 4HBH 1 L Reaction center protein L chain 1063
64 1JGY 1 L Photosynthetic Reaction Center L Subunit 1063
65 2JJ0 2 L REACTION CENTER PROTEIN L CHAIN 1063
66 1JGW 1 L Photosynthetic Reaction Center L subunit 1063
67 1E14 2 L PHOTOSYNTHETIC REACTION CENTER L SUBUNIT 1063
68 3DSY 1 L Reaction center protein L chain 1063
69 1RVJ 1 L Reaction center protein L chain 1063
70 2UWS 2 L REACTION CENTER PROTEIN L CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
71 3V3Z 2 L Reaction center protein L chain 1063
72 1UMX 2 L REACTION CENTER PROTEIN L CHAIN 1063
73 3DU2 1 L Reaction center protein L chain 1063
74 4RCR 1 L PHOTOSYNTHETIC REACTION CENTER 1063
75 1K6L 1 L PHOTOSYNTHETIC REACTION CENTER L SUBUNIT 1063
76 4LWY 2 L Reaction center protein L chain 1063
77 3DTR 1 L Reaction center protein L chain 1063
78 1JGX 1 L Photosynthetic Reaction Center L subunit 1063
79 1K6N 1 L PHOTOSYNTHETIC REACTION CENTER L SUBUNIT 1063
80 1PST 1 L PHOTOSYNTHETIC REACTION CENTER 1063
81 3DTA 1 L Reaction center protein L chain 1063
82 3DTS 1 L Reaction center protein L chain 1063
83 3V3Y 2 L Reaction center protein L chain 1063
84 1PSS 1 L PHOTOSYNTHETIC REACTION CENTER 1063
85 2RCR 1 L PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) 1063
86 1YST 1 L PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT) 1063
87 1L9J 1 L, R REACTION CENTER PROTEIN L CHAIN 1063
88 1Z9J 1 A Reaction center protein L chain 1063
89 4V9G 5 AL, BL Reaction center protein L chain 1063
90 1Z9K 1 A Reaction center protein L chain 1063