Sequence Similarity Clusters for the Entities in PDB 1JGY

Entity #1 | Chains: L
Photosynthetic Reaction Center L Subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 68 410
95 % 67 97 339 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 67 97 365
70 % 67 97 403
50 % 83 126 331
40 % 83 126 357
30 % 83 126 366
Entity #2 | Chains: M
Photosynthetic Reaction Center M Subunit protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53998
95 % 67 97 338 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 67 97 364
70 % 67 97 401
50 % 83 126 330
40 % 83 126 355
30 % 83 126 364
Entity #3 | Chains: H
Photosynthetic Reaction Center H Subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 67 96 246
95 % 67 97 340 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 67 97 366
70 % 67 97 404
50 % 67 97 473
40 % 83 126 358
30 % 83 126 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.