Sequence Similarity Clusters for the Entities in PDB 1JGY

Entity #1 | Chains: L
Photosynthetic Reaction Center L Subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 68 434
95 % 67 97 352 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 67 97 376
70 % 67 97 412
50 % 85 129 349
40 % 85 129 376
30 % 85 129 376
Entity #2 | Chains: M
Photosynthetic Reaction Center M Subunit protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55539
95 % 67 97 351 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.9
PDBFlex
90 % 67 97 375
70 % 67 97 410
50 % 85 129 348
40 % 85 129 375
30 % 85 129 375
Entity #3 | Chains: H
Photosynthetic Reaction Center H Subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 96 256
95 % 67 97 353
90 % 67 97 377
70 % 67 97 413
50 % 67 97 489
40 % 85 129 377
30 % 85 129 377

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.