Sequence Similarity Clusters for the Entities in PDB 1JGX

Entity #1 | Chains: L
Photosynthetic Reaction Center L subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 68 416
95 % 83 97 342 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 83 97 367
70 % 83 97 404
50 % 100 126 334
40 % 100 126 362
30 % 100 126 369
Entity #2 | Chains: M
Photosynthetic Reaction Center M subunit protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54122
95 % 83 97 341
90 % 83 97 366
70 % 83 97 402
50 % 100 126 333
40 % 100 126 361
30 % 100 126 367
Entity #3 | Chains: H
Photosynthetic Reaction Center H subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 96 248
95 % 83 97 343 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 83 97 368
70 % 83 97 405
50 % 83 97 474
40 % 100 126 363
30 % 100 126 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.