Sequence Similarity Clusters for the Entities in PDB 1JGX

Entity #1 | Chains: L
Photosynthetic Reaction Center L subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 68 440
95 % 83 97 357 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 83 97 382
70 % 83 97 418
50 % 103 129 359
40 % 103 129 380
30 % 103 129 380
Entity #2 | Chains: M
Photosynthetic Reaction Center M subunit protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55976
95 % 83 97 356
90 % 83 97 381
70 % 83 97 416
50 % 103 129 358
40 % 103 129 379
30 % 103 129 379
Entity #3 | Chains: H
Photosynthetic Reaction Center H subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 96 261
95 % 83 97 358 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 83 97 383
70 % 83 97 419
50 % 83 97 497
40 % 103 129 381
30 % 103 129 381

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.