Sequence Similarity Clusters for the Entities in PDB 1JGW

Entity #1 | Chains: L
Photosynthetic Reaction Center L subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 68 433
95 % 69 97 344 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 69 97 369
70 % 69 97 405
50 % 89 129 342
40 % 89 129 369
30 % 89 129 369
Entity #2 | Chains: M
Photosynthetic Reaction Center M subunit protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54814
95 % 69 97 343 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.9
PDBFlex
90 % 69 97 368
70 % 69 97 403
50 % 89 129 341
40 % 89 129 368
30 % 89 129 368
Entity #3 | Chains: H
Photosynthetic Reaction Center H subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 69 96 248
95 % 69 97 345 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 69 97 370
70 % 69 97 406
50 % 69 97 480
40 % 89 129 370
30 % 89 129 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.